The Best Healthy Muffin Recipes from the Muffin Queen
That’s right, this Muffin Queen (hi, it’s me!) rounded up my favorite healthy muffin recipes that are perfect for breakfast, snacks, desserts, and especially sharing with the people you love. LET’S DO IT UP PEOPLE.
When I first shared this roundup a couple of years back I only had about 30 muffins recipes, but now we’re just over 50 (and you know there are plenty more to come). Truth: I call baking my therapy. When I’m feeling anxious, I trash up my kitchen and bake my heart out. It soothes the soul.
But you know what I love even more? Baking for the ones I love. There’s nothing better than expressing your love and gratitude for someone than with freshly baked goodies.
How to freeze muffins
All of these wonderful muffin recipes are freezer-friendly! Simply wrap muffins individually in freezer-safe bags or store them in a large freezer bag. When you’re ready to enjoy them, reheat for 30-45 seconds in the microwave or simply thaw them at room temperature.
Our fav tools for baking muffins
Don’t forget to check out all of our favorite kitchen essentials.
Each of these healthy muffin recipes has a unique flavor and add-ins, but they all have one thing in common…they are amazingly fluffy, perfectly sweet and have wholesome ingredients. I created these recipes using different flours so that there’s a good mix of regular and gluten-free that you can share with anyone.
I separated all of these muffins into different flavors for easy scrolling. Yes, many of them overlap because I love to combine lots of flavors together, but you’ll get the gist! I also included oatmeal muffin cups because they’re so cute and muffin-like. BEST breakfast. Enjoy!
GF = gluten free
Banana Muffins
Honey Cinnamon Walnut Banana Muffins
Healthy Double Chocolate Banana Muffins
Paleo Double Chocolate Tahini Banana Muffins GF
Healthy Peanut Butter Banana Muffins GF
Skinny Banana Chocolate Chip Muffins
Power Flax Chocolate Chip Banana Oatmeal Muffins
Vegan Paleo Banana Muffins with Chocolate Chips GF
Flax Almond Meal Banana Muffins with Dark Chocolate (gluten free, paleo!)
Healthy Gluten Free Banana Muffins GF
Oatmeal Cups & Muffins
Carrot Cake Baked Oatmeal Cups GF
Almond Butter Peach Blueberry Oatmeal Cups GF
Chai-Spiced Healthy Apple Oatmeal Muffins
Peanut Butter Banana Baked Oatmeal Cups GF
Almond Butter Apple Cinnamon Baked Oatmeal Cups GF
Baked Pumpkin Chocolate Chip Oatmeal Cups GF
Zucchini Muffins
Heart Healthy Olive Oil Salted Chocolate Chip Zucchini Muffins GF
Healthy Double Chocolate Zucchini Muffins
Morning Glory Zucchini Carrot Muffins GF
Chunky Monkey Zucchini Banana Muffins
Chia, Lemon & Strawberry Zucchini Muffins
Good Morning Healthy Maple Blueberry Zucchini Muffins
Paleo Banana Zucchini Muffins GF
Berry Muffins
The Best Bakery Style Blueberry Muffins You’ll Ever Eat
Strawberry Kissed Almond Butter Muffins GF
Healthier Blueberry Greek Yogurt Muffins
Raspberry, Almond Butter & Banana Oatmeal Muffins
Blackberry Peach Oat Bran Muffins with Chia + Flax GF
The Best Healthy Blueberry Oatmeal Muffins GF
Pumpkin & Sweet Potato Muffins
Nourishing Almond Butter Double Chocolate Pumpkin Muffins (that taste like CAKE!) GF
Pumpkin Zucchini Muffins with Cinnamon Cream Cheese Frosting
Brown Butter Orange Pumpkin Muffins with Orange Glaze
Healthy Chocolate Chip Sweet Potato Muffins
Healthy Pumpkin Banana Muffins with Macadamia Nut Crunch
Healthy Marbled Chocolate Pumpkin Muffins
Chai-Spiced Pumpkin Oatmeal Muffins with Vanilla Bean Cream Cheese Glaze
Healthy Pumpkin Chocolate Chip Muffins
Pumpkin Chocolate Chip Oat Protein Muffins
Whole Wheat Pumpkin Chocolate Chip Muffins (made with greek yogurt!)
Sneaky Veggie Muffins
Blender Banana Spinach Muffins (kid-friendly!) GF
Healthy Carrot Cake Muffins with Cream Cheese Glaze
Blender Double Chocolate Spinach Muffins GF
Savory Muffins
Mushroom Spinach Bacon Egg Cups (low carb!) GF
Healthy Breakfast Egg Muffin Cups GF
Savory Chicken Sausage, Egg and Cheese Muffins (keto + low carb) GF
Loaded Veggie Avocado Quinoa Frittatas GF
Citrus Muffins
Healthy Lemon Poppy Seed Muffins with Lemon Blueberry Glaze
Dreamy Orange Chocolate Chip Muffins
Cornbread Muffins
Gluten Free Cornbread Muffins GF
Healthy Blueberry Zucchini Cornbread Muffins
Healthy Maple Sweet Potato Cornbread Muffins GF
Classic Muffins
Grandma’s Healthy Bran Muffins
Healthy Gluten Free Chocolate Chip Muffins GF
Unique Muffin Recipes
Fluffy Flourless Peanut Butter Chickpea Muffins GF
Flourless Black Bean Brownie Muffins GF
Vegan & Gluten Free Pistachio Muffins with Strawberry Cream Cheese Glaze GF
If you make any of these muffin recipes be sure to leave a comment and a rating on the recipe so I know how you liked it!
